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怎么下載一個DBD的庫啊
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| 想根據(jù)DBD確定轉錄因子,但是從網上找了很多單個的DBD,不能作為一個庫使用,想求問各位大神怎么下載一個DBD的庫啊,或者成套的比較全的也行,謝了 |
» 搶金幣啦!回帖就可以得到:
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個人覺得你可以找作者問問。 Zhang H M, Chen H, Liu W, et al. AnimalTFDB: a comprehensive animal transcription factor database[J]. Nucleic acids research, 2012, 40(D1): D144-D149. We compared our predicted human and mouse TFs with those published by DBD (12) and TFCat (8) databases. DBD is a comprehensive predicted TF database for bacteria, archaea and eukaryotes, while TFCat is a curated catalog for human and mouse TFs. For DBD database, through converting the protein ID into gene ID, we obtained 1383 and 1386 Ensembl gene IDs for human and mouse TF genes, respectively. By comparison, the AnimalTFDB includes 93.7% of human TFs and 93.6% of mouse TFs from DBD database. For the TFs in TFCat database, after ID conversion, we got 521 and 543 Ensembl gene IDs for human and mouse TFs, respectively. The compared result showed that 97.1% of human TFs and 96.3% of mouse TFs from TFCat database were available in our database. |
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