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[求助]
abinit安裝出錯(cuò)
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??8??linux-redhat 5.4 ???????abinit-7.4.2????????????????????C++??fortran??mpich2????????????????????????????????? mpd & [1] 22087 [root@kongzhe abinit-7.4.2]# configuration file /etc/mpd.conf is accessible by others change permissions to allow read and write access only by you # ./config/scripts/makemake [makemake] Starting at 2013/09/15 01:58:48 +0000 [makemake] ------------------------------------- [makemake] === Source tree consistency === [makemake] Enabling write permission for all dirs & files [makemake] === Source tree update === [makemake] Generating CPP option dumper [makemake] Updating routines inside 57_iovars [makemake] Removing build examples [makemake] Generating build examples [makemake] Updating Fortran interfaces [makemake] ---> running ./config/scripts/abilint --dependencies --dump_dtset bindings/parser/dtset.pickle . . 1>abilint.out 2>&1 [makemake] Generating dtset source files [makemake] === Build system update === [makemake] Resetting configuration dumper [makemake] Generating macros for the Autotools [makemake] Generating macros for dumpers [makemake] Generating macros for environment variables [makemake] Generating macros for command-line options [makemake] Generating macros for hints [makemake] Generating macros for debugging [makemake] Generating macros for default optimizations [makemake] Generating macros for per-directory optimizations [makemake] Generating macros for core libraries [makemake] Generating macros for fallback linking make-macros-linking: Could not find config file (fallbacks/config/specs/fallbacks.conf). make-macros-linking: Aborting now. [makemake] Aborting now! #./configure ???????? Summary of important options: * C compiler : gnu version 4.1 * Fortran compiler: gnu version 4.1 * architecture : intel xeon (64 bits) * debugging : basic * optimizations : standard * OpenMP enabled : no (collapse: ignored) * MPI enabled : no * MPI-IO enabled : no * GPU enabled : no (flavor: none) * TRIO flavor = none * TIMER flavor = abinit (libs: ignored) * LINALG flavor = netlib-fallback (libs: ignored) * ALGO flavor = none (libs: ignored) * FFT flavor = none (libs: ignored) * MATH flavor = none (libs: ignored) * DFT flavor = none Configuration complete. You may now type "make" to build ABINIT. (or, on a SMP machine, "make mj4", or "make multi multi_nprocs=<n>"  #make .............................................. /bin/sh ./config.status config.status: creating doc/Makefile config.status: creating config.dump config.status: creating config.pc config.status: creating config.sh config.status: creating config/wrappers/wrap-fc config.status: creating fallbacks/config.mk config.status: creating src/incs/Makefile config.status: creating src/mods/Makefile config.status: creating src/16_hideleave/m_build_info.F90 config.status: creating tests/config.sh config.status: creating tests/tests.env config.status: creating tests/tests-install.env config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/01_gsl_ext/Makefile config.status: creating src/01_interfaces_ext/Makefile config.status: creating src/01_linalg_ext/Makefile config.status: creating src/01_macroavnew_ext/Makefile config.status: creating src/02_clib/Makefile config.status: creating src/10_defs/Makefile config.status: creating src/11_memory_mpi/Makefile config.status: creating src/11_qespresso_ext/Makefile config.status: creating src/12_hide_mpi/Makefile config.status: creating src/14_hidewrite/Makefile config.status: creating src/15_gpu_toolbox/Makefile config.status: creating src/16_hideleave/Makefile config.status: creating src/18_timing/Makefile config.status: creating src/27_toolbox_oop/Makefile config.status: creating src/28_numeric_noabirule/Makefile config.status: creating src/32_util/Makefile config.status: creating src/41_geometry/Makefile config.status: creating src/42_libpaw/Makefile config.status: creating src/42_nlstrain/Makefile config.status: creating src/42_parser/Makefile config.status: creating src/43_ptgroups/Makefile config.status: creating src/43_wvl_wrappers/Makefile config.status: creating src/44_abitypes_defs/Makefile config.status: creating src/45_geomoptim/Makefile config.status: creating src/47_xml/Makefile config.status: creating src/49_gw_toolbox_oop/Makefile config.status: creating src/51_manage_mpi/Makefile config.status: creating src/52_fft_mpi_noabirule/Makefile config.status: creating src/52_manage_cuda/Makefile config.status: creating src/53_abiutil/Makefile config.status: creating src/53_ffts/Makefile config.status: creating src/53_spacepar/Makefile config.status: creating src/56_mixing/Makefile config.status: creating src/56_recipspace/Makefile config.status: creating src/56_xc/Makefile config.status: creating src/57_iopsp_parser/Makefile config.status: creating src/57_iovars/Makefile config.status: creating src/59_io_mpi/Makefile config.status: creating src/61_ionetcdf/Makefile config.status: creating src/62_cg_noabirule/Makefile config.status: creating src/62_iowfdenpot/Makefile config.status: creating src/62_occeig/Makefile config.status: creating src/62_poisson/Makefile config.status: creating src/62_wvl_wfs/Makefile config.status: creating src/63_bader/Makefile config.status: creating src/64_atompaw/Makefile config.status: creating src/65_lotf_base/Makefile config.status: creating src/65_nonlocal/Makefile config.status: creating src/65_psp/Makefile config.status: creating src/66_paw/Makefile config.status: creating src/66_wfs/Makefile config.status: creating src/67_common/Makefile config.status: creating src/68_dmft/Makefile config.status: creating src/68_lotf/Makefile config.status: creating src/68_recursion/Makefile config.status: creating src/68_rsprc/Makefile config.status: creating src/69_wfdesc/Makefile config.status: creating src/70_gw/Makefile config.status: creating src/71_bse/Makefile config.status: creating src/72_response/Makefile config.status: creating src/77_ddb/Makefile config.status: creating src/77_lwf/Makefile config.status: creating src/77_suscep/Makefile config.status: creating src/79_seqpar_mpi/Makefile config.status: creating src/83_cut3d/Makefile config.status: creating src/95_drive/Makefile config.status: creating src/98_main/Makefile config.status: creating src/libs/Makefile config.status: creating tests/Nightly/Makefile config.status: creating bindings/Makefile config.status: creating bindings/parser/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing dump-optim commands /bin/sh: /config/scripts/make-optim-dumper: No such file or directory config.status: executing script-perms commands config.status: executing long-lines commands /bin/sh: /config/scripts/shrink-src-files: No such file or directory (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /root/abinit-7.4.2/config/gnu/missing --run autoheader) rm -f stamp-h1 touch config.h.in cd . && /bin/sh ./config.status config.h config.status: creating config.h config.status: config.h is unchanged make all-recursive make[1]: Entering directory `/root/abinit-7.4.2' Making all in fallbacks make[2]: Entering directory `/root/abinit-7.4.2/fallbacks' make fox make[3]: Entering directory `/root/abinit-7.4.2/fallbacks' The build of fox has been disabled make[3]: Leaving directory `/root/abinit-7.4.2/fallbacks' Checking build of fox fallback test -e stamps/fox-install-stamp make libxc make[3]: Entering directory `/root/abinit-7.4.2/fallbacks' The build of libxc has been disabled make[3]: Leaving directory `/root/abinit-7.4.2/fallbacks' Checking build of libxc fallback test -e stamps/libxc-install-stamp make linalg make[3]: Entering directory `/root/abinit-7.4.2/fallbacks' cd sources/lapack-abinit_6.10 && make -j 5 make[4]: Entering directory `/root/abinit-7.4.2/fallbacks/sources/lapack-abinit_6.10' cd blas && make make[5]: Entering directory `/root/abinit-7.4.2/fallbacks/sources/lapack-abinit_6.10/blas' gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c caxpy.f gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c ccopy.f gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c cdotc.f gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c cdotu.f gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c cgbmv.f cdotu.f:0: 錯(cuò)誤??march= 所帶?????native)??正??cdotu.f:0: 錯(cuò)誤??mtune= 所帶?????native)??正??make[5]: *** [cdotu.o] 錯(cuò)誤 1 make[5]: *** 正在等待未完??的任務(wù).... caxpy.f:0: 錯(cuò)誤??march= 所帶?????native)??正??cdotc.f:0: 錯(cuò)誤??march= 所帶?????native)??正??caxpy.f:0: 錯(cuò)誤??mtune= 所帶?????native)??正??cdotc.f:0: 錯(cuò)誤??mtune= 所帶?????native)??正??cgbmv.f:0: 錯(cuò)誤??march= 所帶?????native)??正??cgbmv.f:0: 錯(cuò)誤??mtune= 所帶?????native)??正??make[5]: *** [cdotc.o] 錯(cuò)誤 1 ccopy.f:0: 錯(cuò)誤??march= 所帶?????native)??正??ccopy.f:0: 錯(cuò)誤??mtune= 所帶?????native)??正??make[5]: *** [caxpy.o] 錯(cuò)誤 1 make[5]: *** [cgbmv.o] 錯(cuò)誤 1 make[5]: *** [ccopy.o] 錯(cuò)誤 1 make[5]: Leaving directory `/root/abinit-7.4.2/fallbacks/sources/lapack-abinit_6.10/blas' make[4]: *** [all_targets] 錯(cuò)誤 2 make[4]: Leaving directory `/root/abinit-7.4.2/fallbacks/sources/lapack-abinit_6.10' make[3]: *** [stamps/linalg-build-stamp] 錯(cuò)誤 2 make[3]: Leaving directory `/root/abinit-7.4.2/fallbacks' make[2]: [all-local] 錯(cuò)誤 2 (忽略) Checking build of linalg fallback test -e stamps/linalg-install-stamp make[2]: *** [all-local] 錯(cuò)誤 1 make[2]: Leaving directory `/root/abinit-7.4.2/fallbacks' make[1]: *** [all-recursive] 錯(cuò)誤 1 make[1]: Leaving directory `/root/abinit-7.4.2' make: *** [all] 錯(cuò)誤 2 |
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這小亂碼貼的，咋看得懂啊…… 
2樓2013-09-13 15:23:44
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不好意思，沒注意成亂碼了。亂碼就是錯(cuò)誤，所帶參數(shù)不正確 #make .............................................. /bin/sh ./config.status config.status: creating doc/Makefile config.status: creating config.dump config.status: creating config.pc config.status: creating config.sh config.status: creating config/wrappers/wrap-fc config.status: creating fallbacks/config.mk config.status: creating src/incs/Makefile config.status: creating src/mods/Makefile config.status: creating src/16_hideleave/m_build_info.F90 config.status: creating tests/config.sh config.status: creating tests/tests.env config.status: creating tests/tests-install.env config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/01_gsl_ext/Makefile config.status: creating src/01_interfaces_ext/Makefile config.status: creating src/01_linalg_ext/Makefile config.status: creating src/01_macroavnew_ext/Makefile config.status: creating src/02_clib/Makefile config.status: creating src/10_defs/Makefile config.status: creating src/11_memory_mpi/Makefile config.status: creating src/11_qespresso_ext/Makefile config.status: creating src/12_hide_mpi/Makefile config.status: creating src/14_hidewrite/Makefile config.status: creating src/15_gpu_toolbox/Makefile config.status: creating src/16_hideleave/Makefile config.status: creating src/18_timing/Makefile config.status: creating src/27_toolbox_oop/Makefile config.status: creating src/28_numeric_noabirule/Makefile config.status: creating src/32_util/Makefile config.status: creating src/41_geometry/Makefile config.status: creating src/42_libpaw/Makefile config.status: creating src/42_nlstrain/Makefile config.status: creating src/42_parser/Makefile config.status: creating src/43_ptgroups/Makefile config.status: creating src/43_wvl_wrappers/Makefile config.status: creating src/44_abitypes_defs/Makefile config.status: creating src/45_geomoptim/Makefile config.status: creating src/47_xml/Makefile config.status: creating src/49_gw_toolbox_oop/Makefile config.status: creating src/51_manage_mpi/Makefile config.status: creating src/52_fft_mpi_noabirule/Makefile config.status: creating src/52_manage_cuda/Makefile config.status: creating src/53_abiutil/Makefile config.status: creating src/53_ffts/Makefile config.status: creating src/53_spacepar/Makefile config.status: creating src/56_mixing/Makefile config.status: creating src/56_recipspace/Makefile config.status: creating src/56_xc/Makefile config.status: creating src/57_iopsp_parser/Makefile config.status: creating src/57_iovars/Makefile config.status: creating src/59_io_mpi/Makefile config.status: creating src/61_ionetcdf/Makefile config.status: creating src/62_cg_noabirule/Makefile config.status: creating src/62_iowfdenpot/Makefile config.status: creating src/62_occeig/Makefile config.status: creating src/62_poisson/Makefile config.status: creating src/62_wvl_wfs/Makefile config.status: creating src/63_bader/Makefile config.status: creating src/64_atompaw/Makefile config.status: creating src/65_lotf_base/Makefile config.status: creating src/65_nonlocal/Makefile config.status: creating src/65_psp/Makefile config.status: creating src/66_paw/Makefile config.status: creating src/66_wfs/Makefile config.status: creating src/67_common/Makefile config.status: creating src/68_dmft/Makefile config.status: creating src/68_lotf/Makefile config.status: creating src/68_recursion/Makefile config.status: creating src/68_rsprc/Makefile config.status: creating src/69_wfdesc/Makefile config.status: creating src/70_gw/Makefile config.status: creating src/71_bse/Makefile config.status: creating src/72_response/Makefile config.status: creating src/77_ddb/Makefile config.status: creating src/77_lwf/Makefile config.status: creating src/77_suscep/Makefile config.status: creating src/79_seqpar_mpi/Makefile config.status: creating src/83_cut3d/Makefile config.status: creating src/95_drive/Makefile config.status: creating src/98_main/Makefile config.status: creating src/libs/Makefile config.status: creating tests/Nightly/Makefile config.status: creating bindings/Makefile config.status: creating bindings/parser/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing dump-optim commands /bin/sh: /config/scripts/make-optim-dumper: No such file or directory config.status: executing script-perms commands config.status: executing long-lines commands /bin/sh: /config/scripts/shrink-src-files: No such file or directory (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /root/abinit-7.4.2/config/gnu/missing --run autoheader) rm -f stamp-h1 touch config.h.in cd . && /bin/sh ./config.status config.h config.status: creating config.h config.status: config.h is unchanged make all-recursive make[1]: Entering directory `/root/abinit-7.4.2' Making all in fallbacks make[2]: Entering directory `/root/abinit-7.4.2/fallbacks' make fox make[3]: Entering directory `/root/abinit-7.4.2/fallbacks' The build of fox has been disabled make[3]: Leaving directory `/root/abinit-7.4.2/fallbacks' Checking build of fox fallback test -e stamps/fox-install-stamp make libxc make[3]: Entering directory `/root/abinit-7.4.2/fallbacks' The build of libxc has been disabled make[3]: Leaving directory `/root/abinit-7.4.2/fallbacks' Checking build of libxc fallback test -e stamps/libxc-install-stamp make linalg make[3]: Entering directory `/root/abinit-7.4.2/fallbacks' cd sources/lapack-abinit_6.10 && make -j 5 make[4]: Entering directory `/root/abinit-7.4.2/fallbacks/sources/lapack-abinit_6.10' cd blas && make make[5]: Entering directory `/root/abinit-7.4.2/fallbacks/sources/lapack-abinit_6.10/blas' gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c caxpy.f gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c ccopy.f gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c cdotc.f gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c cdotu.f gfortran -ffixed-form -g -ffree-line-length-none -O2 -mtune=native -march=native -g -O2 -I/root/abinit-7.4.2/fallbacks/exports/include -c cgbmv.f cdotu.f:0: 錯(cuò)誤：-march= 所帶參數(shù)(native)不正確 cdotu.f:0: 錯(cuò)誤：-mtune= 所帶參數(shù)(native)不正確 make[5]: *** [cdotu.o] 錯(cuò)誤 1 make[5]: *** 正在等待未完成的任務(wù).... caxpy.f:0: 錯(cuò)誤：-march= 所帶參數(shù)(native)不正確 cdotc.f:0: 錯(cuò)誤：-march= 所帶參數(shù)(native)不正確 caxpy.f:0: 錯(cuò)誤：-mtune= 所帶參數(shù)(native)不正確 cdotc.f:0: 錯(cuò)誤：-mtune= 所帶參數(shù)(native)不正確 cgbmv.f:0: 錯(cuò)誤：-march= 所帶參數(shù)(native)不正確 cgbmv.f:0: 錯(cuò)誤：-mtune= 所帶參數(shù)(native)不正確 make[5]: *** [cdotc.o] 錯(cuò)誤 1 ccopy.f:0: 錯(cuò)誤：-march= 所帶參數(shù)(native)不正確 ccopy.f:0: 錯(cuò)誤：-mtune= 所帶參數(shù)(native)不正確 make[5]: *** [caxpy.o] 錯(cuò)誤 1 make[5]: *** [cgbmv.o] 錯(cuò)誤 1 make[5]: *** [ccopy.o] 錯(cuò)誤 1 make[5]: Leaving directory `/root/abinit-7.4.2/fallbacks/sources/lapack-abinit_6.10/blas' make[4]: *** [all_targets] 錯(cuò)誤 2 make[4]: Leaving directory `/root/abinit-7.4.2/fallbacks/sources/lapack-abinit_6.10' make[3]: *** [stamps/linalg-build-stamp] 錯(cuò)誤 2 make[3]: Leaving directory `/root/abinit-7.4.2/fallbacks' make[2]: [all-local] 錯(cuò)誤 2 (忽略) Checking build of linalg fallback test -e stamps/linalg-install-stamp make[2]: *** [all-local] 錯(cuò)誤 1 make[2]: Leaving directory `/root/abinit-7.4.2/fallbacks' make[1]: *** [all-recursive] 錯(cuò)誤 1 make[1]: Leaving directory `/root/abinit-7.4.2' make: *** [all] 錯(cuò)誤 2 |
3樓2013-09-13 16:14:02
souledge
專家顧問(wèn) (著名寫手)
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lingzhe(cenwanglai代發(fā)): 金幣+5, 樓主到處找怎么給你金幣呢 2013-09-17 11:37:56
lingzhe(sunyang1988代發(fā)): 金幣+45, 代轉(zhuǎn)金幣 2013-09-23 13:48:11
lingzhe(cenwanglai代發(fā)): 金幣+5, 樓主到處找怎么給你金幣呢 2013-09-17 11:37:56
lingzhe(sunyang1988代發(fā)): 金幣+45, 代轉(zhuǎn)金幣 2013-09-23 13:48:11
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科學(xué)網(wǎng)的blog中有一篇：http://blog.sciencenet.cn/blog-90975-427216.html。 如果由于小木蟲的原因不容易查看，特摘抄如下（LZ的GNU Fortran正好是4.1版本）： 不一定要完全按照上述博客中的來(lái)做，因?yàn)镚CC系列編譯器已經(jīng)升級(jí)到非常高的版本了。而且，不一定要使用OpenMPI，具體要看服務(wù)器上是什么的。至于Abinit，顯然就用最新版本了。 |
4樓2013-09-14 12:15:30
daofengwalan
金蟲 (小有名氣)
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請(qǐng)問(wèn)樓主的問(wèn)題解決了嗎？ 我也是遇到類似的問(wèn)題，MPI裝的是MPICH2，是直接sudo aptget安裝的，./configure的時(shí)候，也是找不到mpi： * OpenMP enabled : no (collapse: ignored) * MPI enabled : no * MPI-IO enabled : no * GPU enabled : no (flavor: none) 使用which mpirun命令查看，得到 /usr/local/bin/mpirun 這種情況，在.／的時(shí)候應(yīng)該怎么設(shè)置？ |
5樓2014-05-12 10:06:14
相關(guān)版塊跳轉(zhuǎn)
我要訂閱樓主 lingzhe 的主題更新
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