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321wangke321金蟲(chóng) (正式寫(xiě)手)
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[交流]
有沒(méi)有蟲(chóng)友做過(guò)轉(zhuǎn)錄組和代謝組的關(guān)聯(lián)分析的？
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| 委托公司做的轉(zhuǎn)錄組的結(jié)果出來(lái)的，準(zhǔn)備將一些代謝產(chǎn)物測(cè)一下，想將代謝產(chǎn)物和轉(zhuǎn)錄組的結(jié)果進(jìn)行關(guān)聯(lián)分析，但是不知從何下手，請(qǐng)高人指點(diǎn)�。�！ |
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一個(gè)呀路
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4樓2014-05-14 21:12:43
wizardfan
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321wangke321
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3樓2014-05-10 09:59:23
廣之
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可以嘗試下面的數(shù)據(jù)分析處理程序： ProMeTra https://prometra.cebitec.uni-bie ... .cgi?login=prometra 參考文獻(xiàn)： Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example http://www.biomedcentral.com/1752-0509/3/82 IMPaLA http://impala.molgen.mpg.de/ 參考文獻(xiàn)： Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA http://www.biomedcentral.com/1471-2407/10/628 Paintomics http://www.paintomics.org/cgi-bin/main2.cgi 參考文獻(xiàn)： Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3008637/ 以 transcriptomics 和 metabolomics為關(guān)鍵詞，可以檢索到不少文獻(xiàn)的呢，比如： Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana http://www.pnas.org/content/101/27/10205.full Integration of Metabolomics and Transcriptomics Revealed a Fatty Acid Network Exerting Growth Inhibitory Effects in Human Pancreatic Cancer http://clincancerres.aacrjournals.org/content/19/18/4983.short Merging transcriptomics and metabolomics - advances in breast cancer profiling http://www.biomedcentral.com/1471-2407/10/628 Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways http://link.springer.com/article/10.1007%2Fs11306-014-0713-3 Integrative Analysis of Metabolomics and Transcriptomics Data: A Unified Model Framework to Identify Underlying System Pathways http://journals.plos.org/plosone ... ournal.pone.0072116 Integrative Analysis of Transcriptomics, Proteomics, and Metabolomics Data of White Adipose and Liver Tissue of High-Fat Diet and Rosiglitazone-Treated Insulin-Resistant Mice Identified Pathway Alterations and Molecular Hubs http://pubs.acs.org/doi/abs/10.1021/pr5005828 |
6樓2015-03-02 19:08:28
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