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xiaoqiu007新蟲 (小有名氣)
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[求助]
Problem - nscf - c_bands: eigenvalues not converged
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采用pwscf計算費米面時,前面若干步順利通過,但在band_FS.x步驟時報錯 ./bands_FS.x < Bands_NSP.out >bands_fs.out forrtl: severe (59): list-directed I/O syntax error, unit 5, file stdin Image PC Routine Line Source bands_FS.x 0809DB77 Unknown Unknown Unknown bands_FS.x 0809D197 Unknown Unknown Unknown bands_FS.x 08071A96 Unknown Unknown Unknown bands_FS.x 08050B4C Unknown Unknown Unknown bands_FS.x 080507E7 Unknown Unknown Unknown bands_FS.x 08061C93 Unknown Unknown Unknown 請高手賜教!菊娌幌M搯栴}無解】 附1 類似的問題還出現(xiàn)在: http://qe-forge.org/pipermail/pw_forum/2011-October/096758.html; http://www.democritos.it/pipermail/pw_forum/2010-July/017605.html; 以及小木蟲上 http://www.gaoyang168.com/html/201207/4667669.html 附件2:band_FS.x程序需要的input_FS如下: 3 7 9.0728 Sc 16 16 8 1.000000 0.577350 0.000000 0.000000 1.154701 0.000000 0.000000 0.000000 0.628094 附3:非自洽計算所用的輸入和輸出結(jié)果文件如下: 3. 設(shè)定nbnd=16 輸入文件 &control calculation='nscf', prefix='Sc' pseudo_dir = '/home/users/spclibtt/home/yexq/shanghai-opt/pw-work/pseudo/', outdir='/home/users/spclibtt/home/yexq/shanghai-opt/pw-work/environment/tmp/' / &system ibrav = 0, nat= 2, ntyp= 1, ecutwfc = 90, ecutrho = 400.00, nbnd=16 / &electrons diagonalization='cg' mixing_beta = 0.7 conv_thr = 1.0d-10 / #&CELL #cell_dynamics= 'damp-pr' # press=0 #/ ATOMIC_SPECIES Sc 44.9559 Sc.pbe-nsp-van.UPF CELL_PARAMETERS {bohr} 6.254820382 0.00000000 0.00000000 -3.127410191 5.41683334 0.00000000 0.000000000 0.00000000 9.958412336 ATOMIC_POSITIONS {crystal} Sc 0.3333333333333286 0.6666666666666714 0.2500000000000000 Sc 0.6666666666666714 0.3333333333333286 0.7500000000000000 K_POINTS 2601 0.000000 0.000000 0.000000 1.00 0.000000 0.000000 0.078512 1.00 0.000000 0.000000 0.157024 1.00 0.000000 0.000000 0.235535 1.00 0.000000 0.000000 0.314047 1.00 0.000000 0.000000 0.392559 1.00 ..... 輸出文件 Program PWSCF v.5.0.2 (svn rev. 9392) starts on 13Mar2013 at 11:17:57 This program is part of the open-source Quantum ESPRESSO suite for quantum simulation of materials; please cite "P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009); URL http://www.quantum-espresso.org", in publications or presentations arising from this work. More details at http://www.quantum-espresso.org/quote.php Parallel version (MPI), running on 16 processors R & G space division: proc/nbgrp/npool/nimage = 16 Current dimensions of program PWSCF are: Max number of different atomic species (ntypx) = 10 Max number of k-points (npk) = 40000 Max angular momentum in pseudopotentials (lmaxx) = 3 Waiting for input... Reading input from standard input Atomic positions and unit cell read from directory: /home/users/spclibtt/home/yexq/shanghai-opt/pw-work/environment/tmp/Sc.save/ Subspace diagonalization in iterative solution of the eigenvalue problem: a serial algorithm will be used Parallelization info -------------------- sticks: dense smooth PW G-vecs: dense smooth PW Min 66 59 22 2846 2423 554 Max 67 60 23 2855 2438 561 Sum 1069 955 361 45639 38911 8929 bravais-lattice index = 0 lattice parameter (alat) = 6.2548 a.u. unit-cell volume = 337.4042 (a.u.)^3 number of atoms/cell = 2 number of atomic types = 1 number of electrons = 22.00 number of Kohn-Sham states= 16 kinetic-energy cutoff = 90.0000 Ry charge density cutoff = 400.0000 Ry #應該用到900嗎? Exchange-correlation = SLA PW PBE PBE ( 1 4 3 4 0) EXX-fraction = 0.00 celldm(1)= 6.254820 celldm(2)= 0.000000 celldm(3)= 0.000000 celldm(4)= 0.000000 celldm(5)= 0.000000 celldm(6)= 0.000000 crystal axes: (cart. coord. in units of alat) a(1) = ( 1.000000 0.000000 0.000000 ) a(2) = ( -0.500000 0.866025 0.000000 ) a(3) = ( 0.000000 0.000000 1.592118 ) reciprocal axes: (cart. coord. in units 2 pi/alat) b(1) = ( 1.000000 0.577350 0.000000 ) b(2) = ( 0.000000 1.154701 0.000000 ) b(3) = ( 0.000000 0.000000 0.628094 ) PseudoPot. # 1 for Sc read from file: /home/users/spclibtt/home/yexq/shanghai-opt/pw-work/pseudo/Sc.pbe-nsp-van.UPF MD5 check sum: ff19847cdcb3487ca1f25e4b0e9f43ec Pseudo is Ultrasoft + core correction, Zval = 11.0 Generated by new atomic code, or converted to UPF format Using radial grid of 849 points, 6 beta functions with: l(1) = 0 l(2) = 0 l(3) = 1 l(4) = 1 l(5) = 2 l(6) = 2 Q(r) pseudized with 6 coefficients, rinner = 1.200 1.200 1.200 1.200 1.200 atomic species valence mass pseudopotential Sc 11.00 44.95590 Sc( 1.00) 24 Sym. Ops., with inversion, found (12 have fractional translation) Cartesian axes site n. atom positions (alat units) 1 Sc tau( 1) = ( 0.0000000 0.5773503 0.3980295 ) 2 Sc tau( 2) = ( 0.5000000 0.2886751 1.1940885 ) number of k points= 2601 Number of k-points >= 100: set verbosity='high' to print them. Dense grid: 45639 G-vectors FFT dimensions: ( 40, 40, 64) Smooth grid: 38911 G-vectors FFT dimensions: ( 40, 40, 64) Largest allocated arrays est. size (Mb) dimensions Kohn-Sham Wavefunctions 0.08 Mb ( 318, 16) NL pseudopotentials 0.17 Mb ( 318, 36) Each V/rho on FFT grid 0.10 Mb ( 6400) Each G-vector array 0.02 Mb ( 2855) G-vector shells 0.01 Mb ( 1357) Largest temporary arrays est. size (Mb) dimensions Each subspace H/S matrix 0.00 Mb ( 16, 16) Each The potential is recalculated from file : /home/users/spclibtt/home/yexq/shanghai-opt/pw-work/environment/tmp/Sc.save/charge-density.dat Starting wfc are 20 randomized atomic wfcs total cpu time spent up to now is 1.3 secs per-process dynamical memory: 13.6 Mb Band Structure Calculation #【啟動了Band Structure Calculation ,但特征值不收斂】 CG style diagonalization c_bands: 1 eigenvalues not converged #這是什么錯誤 c_bands: 1 eigenvalues not converged c_bands: 2 eigenvalues not converged c_bands: 3 eigenvalues not converged .........#【略去n個...eigenvalues not converged】 c_bands: 2 eigenvalues not converged c_bands: 3 eigenvalues not converged c_bands: 2 eigenvalues not converged c_bands: 2 eigenvalues not converged c_bands: 1 eigenvalues not converged c_bands: 1 eigenvalues not converged ethr = 4.55E-13, avg # of iterations = 57.3 total cpu time spent up to now is 3955.9 secs End of band structure calculation Number of k-points >= 100: set verbosity='high' to print the bands. highest occupied, lowest unoccupied level (ev): 9.9643 8.6137 Writing output data file Sc.save init_run : 0.50s CPU 0.67s WALL ( 1 calls) electrons : 3824.17s CPU 3954.63s WALL ( 1 calls) Called by init_run: wfcinit : 0.00s CPU 0.00s WALL ( 1 calls) potinit : 0.11s CPU 0.11s WALL ( 1 calls) Called by electrons: c_bands : 3824.16s CPU 3954.62s WALL ( 1 calls) v_of_rho : 0.08s CPU 0.09s WALL ( 1 calls) newd : 0.04s CPU 0.04s WALL ( 1 calls) Called by c_bands: init_us_2 : 1.08s CPU 1.03s WALL ( 2601 calls) ccgdiagg : 3501.84s CPU 3601.94s WALL ( 12559 calls) wfcrot : 317.80s CPU 319.55s WALL ( 12559 calls) Called by *cgdiagg: h_psi : 2831.31s CPU 2893.42s WALL ( 2168039 calls) s_psi : 201.42s CPU 204.42s WALL ( 4323519 calls) cdiaghg : 4.95s CPU 5.16s WALL ( 12559 calls) Called by h_psi: add_vuspsi : 115.68s CPU 118.56s WALL ( 2168039 calls) General routines calbec : 507.36s CPU 523.06s WALL ( 4323519 calls) fft : 0.08s CPU 0.09s WALL ( 13 calls) ffts : 0.00s CPU 0.00s WALL ( 1 calls) fftw : 2282.87s CPU 2296.81s WALL ( 4733656 calls) interpolate : 0.00s CPU 0.00s WALL ( 1 calls) davcio : 0.14s CPU 10.04s WALL ( 2601 calls) Parallel routines fft_scatter : 1293.12s CPU 1310.33s WALL ( 4733670 calls) PWSCF : 1h 3m CPU 1h 6m WALL This run was terminated on: 12:24:32 13Mar2013 =------------------------------------------------------------------------------= JOB DONE. =------------------------------------------------------------------------------= |
VASP | 第一性原理計算 |
木蟲 (正式寫手)
木蟲 (正式寫手)
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如何測贗勢,可以參見castep的帖子,過程是一樣的: http://www.gaoyang168.com/bbs/viewthread.php?tid=5153783 LDA還是GGA,參見此帖: http://www.gaoyang168.com/bbs/viewthread.php?tid=5464861&fpage=1 |
金蟲 (著名寫手)
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OK. 既然你是金屬,在計算nscf的時候就必須設(shè)置nbnd,而且必須設(shè)置為電子占據(jù)能帶數(shù)目的1.2倍以上(程序的說明文件里面有詳細說明)。 為什么在scf的時候不需要呢?因為在scf計算的時候,你設(shè)置了smearing,程序自動為你多設(shè)置了部分能帶。而如果不設(shè)置nbnd又沒有設(shè)置smearing,程序默認的是電子占據(jù)的滿能帶數(shù),也就是電子數(shù)目的一半,這對金屬而言是不對的。至于為什么不對,我以前的帖子講過很多了,固體物理里面也應該學過。 |
木蟲 (正式寫手)
木蟲 (正式寫手)
木蟲 (正式寫手)
新蟲 (小有名氣)
木蟲 (正式寫手)
新蟲 (小有名氣)
|
問題依舊沒解決,頭痛: 1) 優(yōu)化了結(jié)構(gòu);并在非自洽計算中先后考察了 2).不同的贗勢:USPP與模守恒贗勢, 3) .修改了mixing_beta--0.2, 4) .增加mixing_ndim=10, 5) . 換了對角化方法'cg'--'david'; 6) . 修改了ecutwfc及ecutrho ....... 問題依然,真的沒轍了。難道真的無解? PWscf 算費米面就要這樣無果而終.....? 貼出:最近一次的nscf部分的輸入文件及輸出文件如下,期待高手斧正: 輸入: ##################( 3.non-scf calculation is performed to obtain the file:$name.nscf.out######################## # to obtain eigenvalues (saving to $name.nscf.out) of the kpoints which are in the file kves_$Sysname cat > $name.nscf.in << EOF &control calculation='nscf', prefix='$name' pseudo_dir = '$PSEUDO_DIR/', outdir='$TMP_DIR/' / &system ibrav = 0, nat= 2, ntyp= 1, ecutwfc = 90, ecutrho = 360.00, nbnd=18 / &electrons diagonalization='cg' mixing_beta = 0.2 mixing_ndim = 10 conv_thr = 1.0d-8 / ATOMIC_SPECIES Sc 44.9559 Sc.pbe-sp-hgh.UPF CELL_PARAMETERS {bohr} 6.270069069 0.001932758 -6.25482E-09 -3.137196645 5.431908189 -1.87645E-08 -1.25096E-08 0.000000000 9.7650248520 ATOMIC_POSITIONS {crystal} Sc 0.333301249 0.666728758 0.250000432 Sc 0.666698751 0.333271242 0.749999568 K_POINTS EOF cat kvecs_$Sysname >>$name.nscf.in $MPIDIR/mpirun -np $NP -machinefile $CURDIR/.nodelist $EXEDIR/pw.x < $name.nscf.in > $name.nscf.out 輸出: ..... Parallel version (MPI), running on 16 processors R & G space division: proc/nbgrp/npool/nimage = 16 Current dimensions of program PWSCF are: Max number of different atomic species (ntypx) = 10 Max number of k-points (npk) = 40000 Max angular momentum in pseudopotentials (lmaxx) = 3 Waiting for input... Reading input from standard input Atomic positions and unit cell read from directory: /home/users/spclibtt/home/yexq/shanghai-opt/pw-work/environment/tmp/Sc.save/ Subspace diagonalization in iterative solution of the eigenvalue problem: a serial algorithm will be used Parallelization info -------------------- sticks: dense smooth PW G-vecs: dense smooth PW Min 60 60 22 2385 2385 544 Max 62 62 23 2390 2390 549 Sum 967 967 367 38201 38201 8755 bravais-lattice index = 0 lattice parameter (alat) = 6.2701 a.u. unit-cell volume = 332.6407 (a.u.)^3 number of atoms/cell = 2 number of atomic types = 1 number of electrons = 22.00 number of Kohn-Sham states= 18 kinetic-energy cutoff = 90.0000 Ry charge density cutoff = 360.0000 Ry Exchange-correlation = SLA-PW-PBX-PBC ( 1 4 3 4 0) EXX-fraction = 0.00 celldm(1)= 6.270069 celldm(2)= 0.000000 celldm(3)= 0.000000 celldm(4)= 0.000000 celldm(5)= 0.000000 celldm(6)= 0.000000 crystal axes: (cart. coord. in units of alat) a(1) = ( 1.000000 0.000308 0.000000 ) a(2) = ( -0.500345 0.866323 0.000000 ) a(3) = ( 0.000000 0.000000 1.557403 ) reciprocal axes: (cart. coord. in units 2 pi/alat) b(1) = ( 0.999822 0.577447 0.000000 ) b(2) = ( -0.000356 1.154098 0.000000 ) b(3) = ( 0.000000 0.000000 0.642095 ) PseudoPot. # 1 for Sc read from file: /home/users/spclibtt/home/yexq/shanghai-opt/pw-work/pseudo/Sc.pbe-sp-hgh.UPF MD5 check sum: 97710d3f2ecb2a27396effe433afd68f Pseudo is Norm-conserving, Zval = 11.0 Generated in analytical, separable form Using radial grid of 1173 points, 5 beta functions with: l(1) = 0 l(2) = 0 l(3) = 1 l(4) = 1 l(5) = 2 atomic species valence mass pseudopotential Sc 11.00 44.95590 Sc( 1.00) 4 Sym. Ops., with inversion, found ( 2 have fractional translation) Cartesian axes site n. atom positions (alat units) 1 Sc tau( 1) = ( -0.0002930 0.5777055 0.3893514 ) 2 Sc tau( 2) = ( 0.4999482 0.2889262 1.1680516 ) number of k points= 2601 Number of k-points >= 100: set verbosity='high' to print them. Dense grid: 38201 G-vectors FFT dimensions: ( 40, 40, 60) Largest allocated arrays est. size (Mb) dimensions Kohn-Sham Wavefunctions 0.08 Mb ( 306, 18) NL pseudopotentials 0.12 Mb ( 306, 26) Each V/rho on FFT grid 0.10 Mb ( 6400) Each G-vector array 0.02 Mb ( 2390) G-vector shells 0.02 Mb ( 2214) Largest temporary arrays est. size (Mb) dimensions Each subspace H/S matrix 0.00 Mb ( 18, 18) Each The potential is recalculated from file : /home/users/spclibtt/home/yexq/shanghai-opt/pw-work/environment/tmp/Sc.save/charge-density.dat Starting wfc are 0 randomized atomic wfcs total cpu time spent up to now is 1.8 secs per-process dynamical memory: 21.1 Mb Band Structure Calculation CG style diagonalization c_bands: 1 eigenvalues not converged c_bands: 1 eigenvalues not converged c_bands: 1 eigenvalues not converged c_bands: 1 eigenvalues not converged c_bands: 1 eigenvalues not converged c_bands: 1 eigenvalues not converged c_bands: 1 eigenvalues not converged ............. |
金蟲 (著名寫手)
新蟲 (小有名氣)
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這是我仿照侯博的Cu的計算例子文件寫的腳步,包括ESPRESSO 5.0.2 pp/examples/example02或老版的example08計算費米面的例子文件中非自洽計算部分均無需設(shè)定smearing。Sc是金屬。 Sc.pbe-sp-hgh.UPF是模守恒贗勢,之前用的是超軟贗勢Sc.pbe-nsp-van.UPF:ecutwfc = 90, ecutrho = 960.00。結(jié)果同上,仍然是不收斂。 贗勢網(wǎng)址如下: http://www.quantum-espresso.org/ ... m_k=&origin_id= #######################【自洽計算,產(chǎn)生$name.scf.out_$a文件,即Sc.scf.out_0文件】################################ self-consistent calculation -Non-Spin-Polarised case #【為什么要進行自洽計算,目的是.....】 for a in 0 do cat > $name.scf.in_$a << EOF &control calculation = 'scf' restart_mode='from_scratch', prefix='$name', pseudo_dir = '$PSEUDO_DIR/', outdir='$TMP_DIR/' tstress=.t., tprnfor=.t. / &system ibrav=0, nat=2, ntyp=1, ecutwfc=90.0, ecutrho = 360.0 occupations='smearing', smearing='methfessel-paxton', degauss=0.02 / &electrons conv_thr = 1.0d-8 mixing_beta = 0.7 / #&CELL #cell_dynamics= 'damp-pr' # press=$a #/ ATOMIC_SPECIES Sc 44.9559 Sc.pbe-nsp-van.UPF CELL_PARAMETERS {bohr} 6.254820382 0.00000000 0.00000000 -3.127410191 5.41683334 0.00000000 0.000000000 0.00000000 9.958412336 ATOMIC_POSITIONS {crystal} Sc 0.3333333333333286 0.6666666666666714 0.2500000000000000 Sc 0.6666666666666714 0.3333333333333286 0.7500000000000000 K_POINTS {automatic} 8 8 4 0 0 0 EOF $PW_ROOT/pw.x < $name.scf.in_$a >$name.scf.out_$a done #########【準備并用kvecs_FS.x程序產(chǎn)生計算費米面要用到的密集網(wǎng)格k點,各k點坐標存儲于文件kves_$Sysname中】############# #kves_$Sysname的定義見keves_FS.f源程序 # prepare input file $name.fs.in # Sysname='$name' Calc_Type='FS' nabc=' 16 16 8' #【k點分割數(shù)與一般的計算相同嗎】 n_start=3 n_last=6 # E_Fermi=`grep Fermi $name.scf.out_$a| cut-c 26-36` #【$name.scf.out_$a,由前一步自洽計算產(chǎn)生】 a1=`grep 'b(1)' $name.scf.out_$a| cut -c 24-54` a2=`grep 'b(2)' $name.scf.out_$a| cut -c 24-54` a3=`grep 'b(3)' $name.scf.out_$a| cut -c 24-54` cat > kvecs_FS.in < $a2 $a3 $nabc $Sysname EOF kvecs_Fs.x < kvecs_FS.in >kvecs_FS.out #########################【非自洽計算,產(chǎn)生文件$name.nscf.out】######################## # 進行一次非自洽計算,計算上一步產(chǎn)生的各k點的本征值; cat > $name.nscf.in << EOF &control calculation='nscf', prefix='$name' pseudo_dir = '$PSEUDO_DIR/', outdir='$TMP_DIR/' / &system ibrav = 0, nat= 2, ntyp= 1, ecutwfc = 90, ecutrho = 400.00, # occupations='smearing', #【非自洽計算這些參數(shù)均無必要】 # smearing='methfessel-paxton', # degauss=0.02 nbnd=8 #【一定要定義nbnd嗎?默認值是.....】 / &electrons diagonalization='cg' mixing_beta = 0.7 conv_thr = 1.0d-10 #【1.0d-10與1.0e-10含義一樣嗎】 / #【diagonalization='cg' 英文注釋:conjugate-gradient-like band-by-band diagonalization. Typically slower than 'david' but it uses less memory and is more robust (it seldom fails)】 #&CELL #cell_dynamics= 'damp-pr' # press=$a #/ ATOMIC_SPECIES Sc 44.9559 Sc.pbe-nsp-van.UPF CELL_PARAMETERS {bohr} 6.254820382 0.00000000 0.00000000 -3.127410191 5.41683334 0.00000000 0.000000000 0.00000000 9.958412336 ATOMIC_POSITIONS {crystal} Sc 0.3333333333333286 0.6666666666666714 0.2500000000000000 Sc 0.6666666666666714 0.3333333333333286 0.7500000000000000 K_POINTS #【K_POINTS已在上一步產(chǎn)生】 EOF cat kvecs_$Sysname >>$name.nscf.in 【將上一步產(chǎn)生的各k點坐標,附加到$name.nscf.in 文件后面】 $PW_ROOT/pw.x< $name.nscf.in >$name.nscf.out ##########【采用bands_FS.x程序?qū)⑸弦徊降玫降膋點及相應本征值轉(zhuǎn)化成xcrysden能讀取的bxsf格式】########################## #【下面是即將見證奇跡的時刻-采用bands_FS.x將計算的k點以及相應的本征值,轉(zhuǎn)換成xcrysden軟件的bxsf格式,以便采用xcrysden來畫圖。 】 # prepare input data (input_FS, Bands.out)for bands_FS mv $name.nscf.out Bands_NSP.out #【注意這利用了非自洽計算產(chǎn)生的$name.nscf.out文件,該步的意義可能是bands_FS.x陳旭默認讀取文件名為 Bands_NSP.out?】 cat > input_FS < $E_Fermi $Sysname $nabc $a1 $a2 $a3 EOF $PW_ROOT/bands_FS.x < Bands_NSP.out >bands_fs.out #【這一操作將產(chǎn)生Bands_FS.bxsf文件】 mv Bands_FS.bxsf $name.fs_NSP.bxsf #【這一操作意義不大,是為了記憶方便】 $ECHO " Fermi surface plot: use 'xcrysden --bxsf $name.fs_NSP.bxsf' to plot ...\c" $ECHO" done" ####################################################### ESPRESSO 5.0.2 pp/examples/example02解讀 |
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