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隱刃之釁木蟲 (小有名氣)
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[求助]
求v2xsf軟件。。。 已有1人參與
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| 用于轉(zhuǎn)化VASP輸出文件的程序。 |

木蟲 (小有名氣)

至尊木蟲 (職業(yè)作家)
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見附件!。 或者從該腳本工具的作者的主頁下載,此作者的主頁上還提供了許多其他的工具腳本: https://sites.google.com/site/rachelbgetman/Home/resources/files Scripts car2cssr -- converts Materials Studio car file to fractional coordinate cssr file car2mol -- converts Materials Studio car file to mol file catpdb2arc -- concatenates a pdb file to each image in a Materials Studio arc file commas -- inserts commas into VASP DOSCAR for parsing configure_XCrysDen_CRC -- installs XCrysDen on ND CRC computers (from ND CRC) coordrot -- rotates coordinate system in VASP POSCAR for DOS analysis gjf2car -- converts PBC Gaussian job file to Materials Studio car file gjf2cssr -- converts PBC Gaussian job file to fractional coordinates cssr file grabfreqs -- grabs frequencies from VASP OUTCAR in2im -- determines whether VASP INCAR is set for NEB or not makevibDOS -- estimates the DOS of frequencies from VASP OUTCAR mpdb2arc -- converts multi-image pdb file to Materials Studio arc file pmachfi -- similar to unix uniq posheights -- procs_used_CRC -- checks user usage on CRC computers procs_used_NWICG -- checks user usage on ND NWICG computers scheights -- gives heights of adsorbates on a surface singxsf2pdb -- converts single image XCrysDen structure file to pdb file subvasp_CRC_080925 -- submits VASP on CRC computers subvasp_CRC_old subvasp_NWICG -- submits VASP on ND NWICG computers subvasp_PNNL -- submits VASP on PNNL computers subvasp_sand v2xsf -- converts VASP POSCAR to XCrysDen structure file (from XCrysDen website) vaspgeom -- parses VASP OUTCAR (from WFS research group) viewmep -- converts POSCAR images from NEB run to a single XDATCAR viewvibs -- converts frequencies in VASP OUTCAR to a single XDATCAR xsf2pdb -- converts multi-image XCrysDen structure file to pdb file Software Birch-Murgnahan equation of state READTHIS fort.2 murg.f |
至尊木蟲 (職業(yè)作家)
至尊木蟲 (職業(yè)作家)
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這個(gè)v2xsf不支持vasp5.x的CONTCAR和POSCAR,因?yàn)関asp5.x在這兩個(gè)文件中增加了一行以寫出每類原子的元素名。你將這一行刪掉就可以了。 你遇到的錯(cuò)誤因?yàn)槟愕腃ONTCAR是vasp5.x 產(chǎn)生的。 v2xsf CONTCAR 它將產(chǎn)生CONTCAR.xsf.gz,然后gzip -d CONTCAR.xsf.gz就去掉了.gz后綴。 將CONTCAR.xsf里有關(guān)原子坐標(biāo)所在行的第一列數(shù)字,可能是1, 2, 3, ..., n(n為原子的種類數(shù)),將它們分別改為元素名之后,再運(yùn)行命令xcrysden -xsf CONTCAR.xsf來顯示。 |
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