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yangisyoung金蟲 (小有名氣)
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[求助]
GROMACS運(yùn)行出錯(cuò)了，求助中 已有3人參與
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大俠們， 我在運(yùn)行GROMACS的時(shí)候能夠出現(xiàn)輸出文件，但是mdrun_mpi迅速終止了，然后*.o文件出現(xiàn)這樣的報(bào)錯(cuò)信息： [node7:03155] *** Process received signal *** [node7:03155] Signal: Segmentation fault (11) [node7:03155] Signal code: Address not mapped (1) [node7:03155] Failing at address: 0x2b4b7b6b3570 [node7:03153] *** Process received signal *** [node7:03153] Signal: Segmentation fault (11) [node7:03153] Signal code: Address not mapped (1) [node7:03153] Failing at address: 0x38587920 [node7:03155] [ 0] /lib64/libpthread.so.0() [0x3fc9c0f4a0] [node7:03155] [ 1] /public/software/gromacs-4.6.5/bin/../lib/libgmx_mpi.so.8(nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_VF_avx_256_single+0x998) [0x2b4b6ef6cc28] [node7:03155] [ 2] /public/software/gromacs-4.6.5/bin/../lib/libgmx_mpi.so.8(do_nonbonded+0xe51) [0x2b4b6ecac481] [node7:03155] [ 3] /public/software/gromacs-4.6.5/bin/../lib/libmd_mpi.so.8(do_force_lowlevel+0x177c) [0x2b4b6e8ddc5c] [node7:03155] [ 4] /public/software/gromacs-4.6.5/bin/../lib/libmd_mpi.so.8(do_force_cutsGROUP+0x1a5d) [0x2b4b6e8759bd] [node7:03155] [ 5] mdrun_mpi(do_md+0x77f2) [0x431a52] [node7:03155] [ 6] mdrun_mpi(mdrunner+0x1441) [0x410b71] [node7:03155] [ 7] mdrun_mpi(cmain+0x183e) [0x43603e] [node7:03155] [ 8] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3fc981ecdd] [node7:03155] [ 9] mdrun_mpi() [0x407189] [node7:03155] *** End of error message *** [node7:03153] [ 0] /lib64/libpthread.so.0() [0x3fc9c0f4a0] [node7:03153] [ 1] /public/software/gromacs-4.6.5/bin/../lib/libgmx_mpi.so.8(nb_kernel_ElecCSTab_VdwNone_GeomW3P1_VF_avx_256_single+0x7da) [0x2acc900d7dfa] [node7:03153] [ 2] /public/software/gromacs-4.6.5/bin/../lib/libgmx_mpi.so.8(do_nonbonded+0xe89) [0x2acc8fe024b9] [node7:03153] [ 3] /public/software/gromacs-4.6.5/bin/../lib/libmd_mpi.so.8(do_force_lowlevel+0x177c) [0x2acc8fa33c5c] [node7:03153] [ 4] /public/software/gromacs-4.6.5/bin/../lib/libmd_mpi.so.8(do_force_cutsGROUP+0x1a5d) [0x2acc8f9cb9bd] [node7:03153] [ 5] mdrun_mpi(do_md+0x77f2) [0x431a52] [node7:03153] [ 6] mdrun_mpi(mdrunner+0x1441) [0x410b71] [node7:03153] [ 7] mdrun_mpi(cmain+0x183e) [0x43603e] [node7:03153] [ 8] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3fc981ecdd] [node7:03153] [ 9] mdrun_mpi() [0x407189] [node7:03153] *** End of error message *** [node7:03156] *** Process received signal *** [node7:03156] Signal: Segmentation fault (11) [node7:03156] Signal code: Address not mapped (1) [node7:03156] Failing at address: 0x2b8e7019c890 [node7:03156] [ 0] /lib64/libpthread.so.0() [0x3fc9c0f4a0] [node7:03156] [ 1] /public/software/gromacs-4.6.5/bin/../lib/libgmx_mpi.so.8(nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_VF_avx_256_single+0x9b5) [0x2b8e63a45c45] [node7:03156] [ 2] /public/software/gromacs-4.6.5/bin/../lib/libgmx_mpi.so.8(do_nonbonded+0xe51) [0x2b8e63785481] [node7:03156] [ 3] /public/software/gromacs-4.6.5/bin/../lib/libmd_mpi.so.8(do_force_lowlevel+0x177c) [0x2b8e633b6c5c] [node7:03156] [ 4] /public/software/gromacs-4.6.5/bin/../lib/libmd_mpi.so.8(do_force_cutsGROUP+0x1a5d) [0x2b8e6334e9bd] [node7:03156] [ 5] mdrun_mpi(do_md+0x77f2) [0x431a52] [node7:03156] [ 6] mdrun_mpi(mdrunner+0x1441) [0x410b71] [node7:03156] [ 7] mdrun_mpi(cmain+0x183e) [0x43603e] [node7:03156] [ 8] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3fc981ecdd] [node7:03156] [ 9] mdrun_mpi() [0x407189] [node7:03156] *** End of error message *** -------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 3153 on node node7 exited on signal 11 (Segmentation fault). -------------------------------------------------------------------------- 有誰知道這樣的問題如何解決呢？ 提前說聲謝謝啦 |
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yangisyoung
金蟲 (小有名氣)
- 應(yīng)助: 1 (幼兒園)
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- 注冊: 2013-05-08
- 專業(yè): 分離過程
9樓2014-03-21 14:42:02
★
感謝參與，應(yīng)助指數(shù) +1
月只藍(lán): 金幣+1, 感謝指導(dǎo)！ 2014-03-19 20:32:01
感謝參與，應(yīng)助指數(shù) +1
月只藍(lán): 金幣+1, 感謝指導(dǎo)！ 2014-03-19 20:32:01
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本帖內(nèi)容被屏蔽 |
2樓2014-03-19 11:09:28
yangisyoung
金蟲 (小有名氣)
- 應(yīng)助: 1 (幼兒園)
- 金幣: 617.6
- 帖子: 293
- 在線: 71.8小時(shí)
- 蟲號: 2453726
- 注冊: 2013-05-08
- 專業(yè): 分離過程
3樓2014-03-20 10:14:44
4樓2014-03-20 10:43:21
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